Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'5-Hairpin pdb3bo01E.e10-16
Source: [PDB-id:chain] 3bo0:E (&rarr PDB)
Source: Information RIBOSOME-SECY COMPLEX
Source: Compound 23S RIBOSOMAL RNA
Source: Resolution 9.60 ANGSTROMS.
Position (10, 16)
Primary structure ('_': anchors) _GGCGA_
Bases with unusual sugar puckers
(Standard: C3'-endo)
3: C2'-endo, 4: C2'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2
2 3 5
3 5 6
4 6 7
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 7 Watson-Crick/Watson-Crick cis
2 2 5 O2'/Watson-Crick ?
3 2 6 Bifurcated/O2' trans y
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters