Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'3-3-Internal Loop pdb3bbxFB.n1481-1647
Source: [PDB-id:chain] 3bbx:B (&rarr PDB)
Source: Information THE HSP15 PROTEIN FITTED INTO THE LOW RESOLUTION CRYO-EM MAP OF THE 50S.NC-TRNA.HSP15 COMPLEX
Source: Compound 23S RIBOSOMAL RNA
FLIPPED INTERNAL
Source: Resolution 0.00 ANGSTROMS.
Position (1482, 1646), (1486, 1642)
Primary structure ('_': anchors) _UAA_-_GAA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		7: C4'-exo, 8: C4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 2 3 ↑
3 3 8 →
4 4 5 ↑
5 6 8 ↑
6 9 10 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 9 Bifurcated/Bifurcated cis y
2 1 10 Watson-Crick/Watson-Crick cis
3 2 9 Bifurcated/O2' trans
4 3 9 O2'/Watson-Crick ?
5 3 10 O2'/Bifurcated ?
6 4 8 Watson-Crick/Hoogsteen trans
7 5 6 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters