Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'4-5-Internal Loop pdb3bbx1B.n707-724
Source: [PDB-id:chain] 3bbx:B (&rarr PDB)
Source: Information THE HSP15 PROTEIN FITTED INTO THE LOW RESOLUTION CRYO-EM MAP OF THE 50S.NC-TRNA.HSP15 COMPLEX
Source: Compound 23S RIBOSOMAL RNA
Source: Resolution 0.00 ANGSTROMS.
Position (702, 730), (707, 724)
Primary structure ('_': anchors) _UGAA_-_GGAGG_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		3: C4'-exo, 11: C2'-endo, 12: C4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		12: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 2 3 ↑
3 3 9 &larr
4 4 5 ↑
5 4 10 →
6 5 6 ↑
7 7 8 ↑
8 8 9 ↑
9 10 11 ↑
10 11 13 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 13 Watson-Crick/Watson-Crick cis
2 2 11 Watson-Crick/Watson-Crick cis
3 3 9 Bifurcated/O2' ?
4 3 10 Bifurcated/O2' trans
5 4 8 Watson-Crick/O2' ?
6 4 9 O2'/Bifurcated trans
7 5 8 O2'/Bifurcated trans
8 6 7 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters