Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'9-Segment pdb3bbx1B.i474-484
Source: [PDB-id:chain] 3bbx:B (&rarr PDB)
Source: Information THE HSP15 PROTEIN FITTED INTO THE LOW RESOLUTION CRYO-EM MAP OF THE 50S.NC-TRNA.HSP15 COMPLEX
Source: Compound 23S RIBOSOMAL RNA
Source: Resolution 0.00 ANGSTROMS.
Position (474, 484)
Primary structure ('_': anchors) _CGAAAAGAA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		1: C2'-endo, 6: C2'-endo, 8: C2'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 2 3 ↑
2 2 8 →
3 4 5 ↑
4 5 7 ↑
5 6 7 ↓
6 6 8 ↑
7 10 11 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 2 6 Hoogsteen/Watson-Crick trans y
2 3 5 Hoogsteen/O2' ?
3 3 7 Hoogsteen/Sugar trans
4 10 11 Bifurcated/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters