Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'8-Segment pdb3bbx1B.i366-375
Source: [PDB-id:chain] 3bbx:B (&rarr PDB)
Source: Information THE HSP15 PROTEIN FITTED INTO THE LOW RESOLUTION CRYO-EM MAP OF THE 50S.NC-TRNA.HSP15 COMPLEX
Source: Compound 23S RIBOSOMAL RNA
Source: Resolution 0.00 ANGSTROMS.
Position (366, 375)
Primary structure ('_': anchors) _GAUGAGUA_
Bases with unusual sugar puckers
(Standard: C3'-endo)
4: C2'-endo, 5: C3'-exo, 6: C2'-endo, 7: C2'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
5: syn, 7: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2
2 2 3
3 9 10
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 7 8 Hoogsteen/Sugar cis y
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters