Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'22-Segment pdb3bbx1B.i1069-1092
Source: [PDB-id:chain] 3bbx:B (&rarr PDB)
Source: Information THE HSP15 PROTEIN FITTED INTO THE LOW RESOLUTION CRYO-EM MAP OF THE 50S.NC-TRNA.HSP15 COMPLEX
Source: Compound 23S RIBOSOMAL RNA
Source: Resolution 0.00 ANGSTROMS.
Position (1069, 1092)
Primary structure ('_': anchors) _AAAGUCAUGGUUAAGUGGGAAA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		2: C2'-endo, 3: C4'-exo, 5: C2'-endo, 6: C2'-endo, 14: C2'-endo, 16: C2'-endo, 19: C2'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		5: syn, 16: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 &larr
2 3 4 ↑
3 5 7 ↑
4 7 8 ↑
5 8 9 ↑
6 10 11 ↑
7 11 12 ↑
8 12 13 ↑
9 15 17 ↑
10 17 18 ↑
11 18 19 &larr
12 20 21 ↑
13 22 23 ↑
14 23 24 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 13 15 Watson-Crick/O2' ?
2 16 17 Hoogsteen/Sugar cis y
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters