Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'4-3-Internal Loop pdb3bbx1A.n17-64
Source: [PDB-id:chain] 3bbx:A (&rarr PDB)
Source: Information THE HSP15 PROTEIN FITTED INTO THE LOW RESOLUTION CRYO-EM MAP OF THE 50S.NC-TRNA.HSP15 COMPLEX
Source: Compound 5S RIBOSOMAL RNA
Source: Resolution 0.00 ANGSTROMS.
Position (22, 59), (27, 55)
Primary structure ('_': anchors) _GUCC_-_AAA_
Bases with unusual sugar puckers
(Standard: C3'-endo)
2: C2'-endo, 7: C2'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
2: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 2 7 &larr
2 4 5
3 5 6
4 8 9
5 9 10
6 10 11
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 11 Watson-Crick/Watson-Crick cis
2 2 5 Watson-Crick/Sugar trans
3 6 7 Watson-Crick/Watson-Crick cis
4 7 10 Bifurcated/O2' trans y
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters