Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'5-6-Internal Loop pdb3bboFC.n47-71
Source: [PDB-id:chain] 3bbo:C (&rarr PDB)
Source: Information HOMOLOGY MODEL FOR THE SPINACH CHLOROPLAST 50S SUBUNIT FITTED TO 9.4A CRYO-EM MAP OF THE 70S CHLORORIBOSOME
Source: Compound 4.8S RRNA
FLIPPED INTERNAL
Source: Resolution 9.40 ANGSTROMS.
Position (48, 70), (55, 64)
Primary structure ('_': anchors) _AUGCA_-_GGAAGU_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		None
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 4 5 &larr
3 5 6 ↑
4 9 10 ↑
5 10 11 ↑
6 11 12 ↑
7 14 15 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 15 Watson-Crick/Watson-Crick cis y
2 2 3 Hoogsteen/O2' ?
3 2 12 O2'/Bifurcated ?
4 2 14 Bifurcated/O2' trans y
5 4 12 Bifurcated/O2' ?
6 4 13 Sugar/O2' ?
7 5 10 Watson-Crick/Watson-Crick cis
8 7 8 Watson-Crick/Watson-Crick cis y
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters