Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'9-7-Internal Loop pdb3bboFA.n820-912
Source: [PDB-id:chain] 3bbo:A (&rarr PDB)
Source: Information HOMOLOGY MODEL FOR THE SPINACH CHLOROPLAST 50S SUBUNIT FITTED TO 9.4A CRYO-EM MAP OF THE 70S CHLORORIBOSOME
Source: Compound 23S RRNA
FLIPPED INTERNAL
Source: Resolution 9.40 ANGSTROMS.
Position (823, 909), (831, 899)
Primary structure ('_': anchors) _AGUCAAGGU_-_ACUGGAC_
Bases with unusual sugar puckers
(Standard: C3'-endo)
None
Bases with unusual glycosidic-bond configuration
(Standard: anti)
16: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 2 3
2 7 8
3 8 9
4 9 10
5 12 13
6 13 14
7 14 15
8 18 19
9 19 20
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 20 Watson-Crick/Watson-Crick cis
2 3 5 Hoogsteen/O2' ?
3 3 18 Watson-Crick/Watson-Crick cis
4 4 5 Hoogsteen/O2' ?
5 11 12 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters