Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'6-5-Internal Loop pdb3bboFA.n681-713
Source: [PDB-id:chain] 3bbo:A (&rarr PDB)
Source: Information HOMOLOGY MODEL FOR THE SPINACH CHLOROPLAST 50S SUBUNIT FITTED TO 9.4A CRYO-EM MAP OF THE 70S CHLORORIBOSOME
Source: Compound 23S RRNA
FLIPPED INTERNAL
Source: Resolution 9.40 ANGSTROMS.
Position (682, 712), (688, 705)
Primary structure ('_': anchors) _GGAGGU_-_AUGAA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		None
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 2 4 ↑
2 4 5 ↑
3 5 11 →
4 6 7 ↑
5 6 12 &larr
6 7 8 ↑
7 9 10 ↑
8 10 11 ↑
9 12 13 ↑
10 13 14 ↑
11 14 15 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 15 Watson-Crick/Watson-Crick cis
2 4 13 Watson-Crick/Watson-Crick cis y
3 5 12 Watson-Crick/O2' trans
4 6 11 O2'/Bifurcated trans
5 7 10 Sugar/Hoogsteen trans y
6 8 9 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters