Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'9-6-Internal Loop pdb3bboFA.n652-790
Source: [PDB-id:chain] 3bbo:A (&rarr PDB)
Source: Information HOMOLOGY MODEL FOR THE SPINACH CHLOROPLAST 50S SUBUNIT FITTED TO 9.4A CRYO-EM MAP OF THE 70S CHLORORIBOSOME
Source: Compound 23S RRNA
FLIPPED INTERNAL
Source: Resolution 9.40 ANGSTROMS.
Position (653, 789), (660, 779)
Primary structure ('_': anchors) _GAGCUAGCU_-_CGAACC_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		None
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 2 3 ↑
2 5 6 ↑
3 5 17 &larr
4 6 7 ↑
5 9 10 &larr
6 10 11 ↑
7 12 13 ↑
8 15 16 ↑
9 17 18 ↑
10 18 19 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 19 Watson-Crick/Watson-Crick cis
2 3 4 Bifurcated/O2' ?
3 3 17 Watson-Crick/Watson-Crick cis
4 6 16 Watson-Crick/Hoogsteen trans
5 9 13 Watson-Crick/Watson-Crick trans y
6 11 12 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters