Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'6-5-Internal Loop pdb3bbo1C.n55-64
Source: [PDB-id:chain] 3bbo:C (&rarr PDB)
Source: Information HOMOLOGY MODEL FOR THE SPINACH CHLOROPLAST 50S SUBUNIT FITTED TO 9.4A CRYO-EM MAP OF THE 70S CHLORORIBOSOME
Source: Compound 4.8S RRNA
Source: Resolution 9.40 ANGSTROMS.
Position (48, 70), (55, 64)
Primary structure ('_': anchors) _GGAAGU_-_AUGCA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		None
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 4 5 ↑
3 5 6 ↑
4 6 7 ↑
5 10 11 ↑
6 11 12 &larr
7 14 15 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 15 Watson-Crick/Watson-Crick cis y
2 2 14 Bifurcated/O2' trans y
3 3 12 Sugar/O2' ?
4 4 12 Bifurcated/O2' ?
5 4 14 O2'/Bifurcated ?
6 6 11 Watson-Crick/Watson-Crick cis
7 8 9 Watson-Crick/Watson-Crick cis y
8 13 14 Hoogsteen/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters