Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'9-8-Internal Loop pdb3bbo1A.n1003-1097
Source: [PDB-id:chain] 3bbo:A (&rarr PDB)
Source: Information HOMOLOGY MODEL FOR THE SPINACH CHLOROPLAST 50S SUBUNIT FITTED TO 9.4A CRYO-EM MAP OF THE 70S CHLORORIBOSOME
Source: Compound 23S RRNA
Source: Resolution 9.40 ANGSTROMS.
Position (1004, 1096), (1014, 1087)
Primary structure ('_': anchors) _AGGUAGGGG_-_CUCUUGCG_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		None
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 4 5 ↑
3 4 20 →
4 6 7 ↑
5 6 18 →
6 7 8 ↑
7 8 9 ↑
8 9 10 ↑
9 10 11 ↑
10 12 13 ↑
11 14 15 ↑
12 15 16 ↑
13 16 17 ↑
14 18 19 ↑
15 20 21 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 21 Watson-Crick/Watson-Crick cis
2 2 20 Watson-Crick/Watson-Crick cis
3 7 16 Watson-Crick/Watson-Crick cis y
4 11 12 Watson-Crick/Watson-Crick cis y
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters