Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'22-Segment pdb3bbo1A.i980-1003
Source: [PDB-id:chain] 3bbo:A (&rarr PDB)
Source: Information HOMOLOGY MODEL FOR THE SPINACH CHLOROPLAST 50S SUBUNIT FITTED TO 9.4A CRYO-EM MAP OF THE 70S CHLORORIBOSOME
Source: Compound 23S RRNA
Source: Resolution 9.40 ANGSTROMS.
Position (980, 1003)
Primary structure ('_': anchors) _UAAAUGACCGCUCAGUGAUAAA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		None
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 5 7 ↑
2 7 8 ↑
3 8 9 ↑
4 9 10 ↑
5 10 11 ↑
6 11 12 ↑
7 12 13 ↑
8 15 17 ↑
9 17 18 ↑
10 20 21 ↑
11 22 23 ↑
12 23 24 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 13 15 Sugar/O2' ?
2 16 18 Hoogsteen/O2' ?
3 16 19 Bifurcated/O2' ?
4 18 19 Hoogsteen/Hoogsteen cis y
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters