Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'22-Segment pdb3bbo1A.i1701-1724
Source: [PDB-id:chain] 3bbo:A (&rarr PDB)
Source: Information HOMOLOGY MODEL FOR THE SPINACH CHLOROPLAST 50S SUBUNIT FITTED TO 9.4A CRYO-EM MAP OF THE 70S CHLORORIBOSOME
Source: Compound 23S RRNA
Source: Resolution 9.40 ANGSTROMS.
Position (1701, 1724)
Primary structure ('_': anchors) _GCGACUGUUUACCAAAAACACA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		None
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 2 3 ↑
2 5 6 ↑
3 6 7 ↑
4 7 8 ↑
5 8 9 ↑
6 9 10 ↑
7 17 19 ↑
8 19 20 ↑
9 20 21 ↑
10 21 22 ↑
11 22 23 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 4 6 O2'/Sugar ?
2 8 20 Watson-Crick/Watson-Crick cis
3 10 16 O2'/Watson-Crick ?
4 11 15 Bifurcated/O2' ?
5 11 16 Watson-Crick/O2' ?
6 12 13 Hoogsteen/Hoogsteen cis y
7 17 18 Hoogsteen/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters