Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'16-Segment pdb3bbo1A.i1335-1352
Source: [PDB-id:chain] 3bbo:A (&rarr PDB)
Source: Information HOMOLOGY MODEL FOR THE SPINACH CHLOROPLAST 50S SUBUNIT FITTED TO 9.4A CRYO-EM MAP OF THE 70S CHLORORIBOSOME
Source: Compound 23S RRNA
Source: Resolution 9.40 ANGSTROMS.
Position (1335, 1352)
Primary structure ('_': anchors) _CGUAGUCGAUGGACAA_
Bases with unusual sugar puckers
(Standard: C3'-endo)
None
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2
2 2 3
3 5 6
4 6 7
5 8 9
6 10 12
7 12 13
8 17 18
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 5 6 Hoogsteen/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters