Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'6-6-Internal Loop pdb3bbnFA.n1187-1236
Source: [PDB-id:chain] 3bbn:A (&rarr PDB)
Source: Information HOMOLOGY MODEL FOR THE SPINACH CHLOROPLAST 30S SUBUNIT FITTED TO 9.4A CRYO-EM MAP OF THE 70S CHLORORIBOSOME.
Source: Compound 16S RRNA
FLIPPED INTERNAL
Source: Resolution 9.40 ANGSTROMS.
Position (1189, 1234), (1196, 1227)
Primary structure ('_': anchors) _AAAAAC_-_GACAAA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		None
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 2 3 ↑
3 3 4 ↑
4 4 5 ↑
5 5 12 →
6 9 10 ↑
7 10 11 ↑
8 11 12 ↑
9 13 14 ↑
10 15 16 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 16 Watson-Crick/Watson-Crick cis y
2 3 14 Hoogsteen/Watson-Crick trans y
3 4 13 Hoogsteen/Watson-Crick trans
4 7 10 Watson-Crick/Watson-Crick cis y
5 8 9 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters