Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'2-4-Internal Loop pdb3bbn1A.n1196-1227
Source: [PDB-id:chain] 3bbn:A (&rarr PDB)
Source: Information HOMOLOGY MODEL FOR THE SPINACH CHLOROPLAST 30S SUBUNIT FITTED TO 9.4A CRYO-EM MAP OF THE 70S CHLORORIBOSOME.
Source: Compound 16S RRNA
Source: Resolution 9.40 ANGSTROMS.
Position (1198, 1225), (1201, 1220)
Primary structure ('_': anchors) _UC_-_UAAC_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		8: C4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		2: syn, 6: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 7 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 4 Sugar/O2' ?
2 1 10 Watson-Crick/Watson-Crick cis
3 4 5 Watson-Crick/Watson-Crick cis
4 5 10 Watson-Crick/O2' ?
5 6 7 Hoogsteen/O2' ?
6 7 10 Bifurcated/O2' ?
7 9 10 Bifurcated/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters