Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'2-6-1-1-3-Multiloop pdb3bbn1A.m52-322
Source: [PDB-id:chain] 3bbn:A (&rarr PDB)
Source: Information HOMOLOGY MODEL FOR THE SPINACH CHLOROPLAST 30S SUBUNIT FITTED TO 9.4A CRYO-EM MAP OF THE 70S CHLORORIBOSOME.
Source: Compound 16S RRNA
Source: Resolution 9.40 ANGSTROMS.
Position (54, 320), (57, 85), (92, 280), (282, 303), (305, 316)
Primary structure ('_': anchors) _AA_-_GGACGG_-_A_-_A_-_GCA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		None
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		7: syn, 8: syn, 22: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 2 23 →
2 4 6 →
3 5 6 ↑
4 9 10 ↑
5 10 11 ↑
6 11 12 ↑
7 12 14 →
8 15 20 ↓
9 16 17 ↑
10 17 18 ↑
11 19 20 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 23 Watson-Crick/Watson-Crick cis
2 3 6 O2'/Watson-Crick ?
3 3 9 Watson-Crick/Hoogsteen trans y
4 3 10 Bifurcated/O2' ?
5 4 5 Watson-Crick/Watson-Crick cis
6 11 14 Watson-Crick/Watson-Crick cis
7 12 13 Watson-Crick/Watson-Crick cis
8 12 22 O2'/Sugar ?
9 14 23 O2'/Sugar ?
10 15 16 Watson-Crick/Watson-Crick cis
11 17 20 Watson-Crick/Watson-Crick cis y
12 18 19 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters