Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'7-Segment pdb3b4b1B.i67-75
Source: [PDB-id:chain] 3b4b:B (&rarr PDB)
Source: Information T. TENGCONGENSIS GLMS RIBOZYME WITH G40A MUTATION, BOUND TO GLUCOSAMINE-6-PHOSPHATE AND A SUBSTRATE RNA WITH A 2'5'- PHOSPHODIESTER LINKAGE
Source: Compound GLMS RIBOZYME RNA
Source: Resolution 2.70 ANGSTROMS.
Position (67, 75)
Primary structure ('_': anchors) _GUUAGAG_
Bases with unusual sugar puckers
(Standard: C3'-endo)
2: C3'-exo, 3: C2'-endo, 4: C3'-exo, 6: C2'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
6: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2
2 3 5
3 7 8
4 8 9
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 6 7 Hoogsteen/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters