Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'12-Hairpin pdb3b4b1B.e16-29
Source: [PDB-id:chain] 3b4b:B (&rarr PDB)
Source: Information T. TENGCONGENSIS GLMS RIBOZYME WITH G40A MUTATION, BOUND TO GLUCOSAMINE-6-PHOSPHATE AND A SUBSTRATE RNA WITH A 2'5'- PHOSPHODIESTER LINKAGE
Source: Compound GLMS RIBOZYME RNA
Source: Resolution 2.70 ANGSTROMS.
Position (16, 29)
Primary structure ('_': anchors) _GAGCAGGGUUUA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		4: C2'-endo, 11: C2'-endo, 12: C3'-exo, 13: C3'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		4: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 2 3 ↑
3 5 6 ↑
4 6 7 ↑
5 7 8 ↑
6 8 9 ↑
7 9 10 ↑
8 10 11 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 14 Watson-Crick/Watson-Crick cis
2 11 13 Hoogsteen/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters