Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'3-3-Internal Loop pdb2zjrFX.n2491-2519
Source: [PDB-id:chain] 2zjr:X (&rarr PDB)
Source: Information REFINED NATIVE STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT (50S) FROM DEINOCOCCUS RADIODURANS
Source: Compound RIBOSOMAL 23S RNA
FLIPPED INTERNAL
Source: Resolution 2.91 ANGSTROMS.
Position (2487, 2523), (2491, 2519)
Primary structure ('_': anchors) _GUA_-_CUC_
Bases with unusual sugar puckers
(Standard: C3'-endo)
3: C2'-exo, 7: C1'-exo, 8: O4'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2
2 4 5
3 9 10
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 10 Watson-Crick/Watson-Crick cis
2 3 9 O2'/Bifurcated ?
3 4 8 Bifurcated/O2' ?
4 5 6 Watson-Crick/Watson-Crick cis
5 6 8 Bifurcated/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters