Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'3-3-Internal Loop pdb2zjr1X.n542-563
Source: [PDB-id:chain] 2zjr:X (&rarr PDB)
Source: Information REFINED NATIVE STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT (50S) FROM DEINOCOCCUS RADIODURANS
Source: Compound RIBOSOMAL 23S RNA
Source: Resolution 2.91 ANGSTROMS.
Position (544, 561), (548, 557)
Primary structure ('_': anchors) _UAA_-_GGA_
Bases with unusual sugar puckers
(Standard: C3'-endo)
1: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
2: syn, 8: syn, 9: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 2 8 &larr
2 3 4
3 3 9
4 4 5
5 6 7
6 9 10
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 10 Watson-Crick/Watson-Crick cis
2 3 7 Watson-Crick/O2' ?
3 4 7 O2'/Bifurcated trans
4 5 6 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters