Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'3-7-Internal Loop pdb2zjqFX.n974-1031
Source: [PDB-id:chain] 2zjq:X (&rarr PDB)
Source: Information INTERACTION OF L7 WITH L11 INDUCED BY MICROCCOCIN BINDING TO THE DEINOCOCCUS RADIODURANS 50S SUBUNIT
Source: Compound RIBOSOMAL 23S RNA
FLIPPED INTERNAL
Source: Resolution 3.30 ANGSTROMS.
Position (966, 1035), (974, 1031)
Primary structure ('_': anchors) _CGA_-_AUAGACA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		1: C2'-exo, 5: C2'-exo, 9: C2'-exo, 10: C4'-exo, 11: C4'-exo, 12: C4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		13: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 3 4 ↑
2 3 10 &larr
3 6 7 ↑
4 7 8 ↑
5 8 9 ↑
6 13 14 &larr
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 9 O2'/Bifurcated ?
2 1 14 Watson-Crick/Watson-Crick cis
3 2 10 Hoogsteen/Sugar trans y
4 3 9 Bifurcated/O2' ?
5 3 10 Bifurcated/O2' ?
6 4 9 Bifurcated/O2' ?
7 5 6 Watson-Crick/Watson-Crick cis y
8 10 12 C/O2' ?
9 11 12 Bifurcated/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters