Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'5-4-Internal Loop pdb2zjqFX.n794-848
Source: [PDB-id:chain] 2zjq:X (&rarr PDB)
Source: Information INTERACTION OF L7 WITH L11 INDUCED BY MICROCCOCIN BINDING TO THE DEINOCOCCUS RADIODURANS 50S SUBUNIT
Source: Compound RIBOSOMAL 23S RNA
FLIPPED INTERNAL
Source: Resolution 3.30 ANGSTROMS.
Position (799, 843), (804, 837)
Primary structure ('_': anchors) _CCGAA_-_GUAG_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		2: C2'-exo, 13: C4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 2 3 ↑
3 3 10 →
4 4 5 ↑
5 4 12 &larr
6 8 9 ↑
7 9 10 ↑
8 10 11 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 13 Watson-Crick/Watson-Crick cis y
2 4 10 O2'/Bifurcated trans
3 4 11 Watson-Crick/O2' ?
4 5 9 Watson-Crick/Watson-Crick cis
5 7 8 Watson-Crick/Watson-Crick cis
6 11 12 Hoogsteen/Sugar cis y
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters