Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'8-5-Internal Loop pdb2zjqFX.n619-740
Source: [PDB-id:chain] 2zjq:X (&rarr PDB)
Source: Information INTERACTION OF L7 WITH L11 INDUCED BY MICROCCOCIN BINDING TO THE DEINOCOCCUS RADIODURANS 50S SUBUNIT
Source: Compound RIBOSOMAL 23S RNA
FLIPPED INTERNAL
Source: Resolution 3.30 ANGSTROMS.
Position (613, 749), (619, 740)
Primary structure ('_': anchors) _AGAUAGCU_-_CGAAA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		2: C4'-exo, 4: C4'-exo, 8: C4'-exo, 13: C4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		13: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 5 14 →
3 5 15 &larr
4 6 7 ↑
5 7 12 →
6 9 10 &larr
7 11 12 ↑
8 13 14 &larr
9 16 17 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 17 Watson-Crick/Watson-Crick cis
2 3 15 Watson-Crick/Watson-Crick cis
3 6 14 Watson-Crick/Hoogsteen trans
4 8 17 Bifurcated/O2' ?
5 9 11 Watson-Crick/Watson-Crick trans y
6 9 12 Watson-Crick/Watson-Crick trans y
7 10 11 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters