Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'8-8-Internal Loop pdb2zjqFX.n1753-1788
Source: [PDB-id:chain] 2zjq:X (&rarr PDB)
Source: Information INTERACTION OF L7 WITH L11 INDUCED BY MICROCCOCIN BINDING TO THE DEINOCOCCUS RADIODURANS 50S SUBUNIT
Source: Compound RIBOSOMAL 23S RNA
FLIPPED INTERNAL
Source: Resolution 3.30 ANGSTROMS.
Position (1755, 1786), (1764, 1777)
Primary structure ('_': anchors) _GAAAUGAA_-_CAAGUGGA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		8: C2'-exo, 9: C2'-exo, 10: C4'-exo, 14: C2'-exo, 19: C4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		4: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 2 3 ↑
2 3 18 →
3 4 5 &larr
4 5 6 ↑
5 6 7 ↑
6 7 8 ↑
7 8 12 →
8 9 10 ↑
9 11 12 ↑
10 13 14 ↑
11 14 15 ↑
12 15 16 ↑
13 16 17 ↑
14 17 18 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 20 Watson-Crick/Watson-Crick cis y
2 4 17 O2'/Bifurcated ?
3 4 18 O2'/Bifurcated ?
4 6 15 Watson-Crick/Watson-Crick cis
5 7 14 Hoogsteen/Sugar trans
6 9 12 Sugar/Hoogsteen trans
7 10 11 Watson-Crick/Watson-Crick cis
8 12 13 C/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters