Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'3-2-Internal Loop pdb2zjq1X.n779-863
Source: [PDB-id:chain] 2zjq:X (&rarr PDB)
Source: Information INTERACTION OF L7 WITH L11 INDUCED BY MICROCCOCIN BINDING TO THE DEINOCOCCUS RADIODURANS 50S SUBUNIT
Source: Compound RIBOSOMAL 23S RNA
Source: Resolution 3.30 ANGSTROMS.
Position (785, 857), (789, 854)
Primary structure ('_': anchors) _GUU_-_UA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		2: C2'-exo, 5: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 6 7 ↑
3 8 9 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 9 Watson-Crick/Watson-Crick cis
2 3 4 Watson-Crick/O2' ?
3 4 8 Watson-Crick/Watson-Crick cis
4 5 6 Watson-Crick/Watson-Crick cis
5 5 7 O2'/Bifurcated ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters