Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'5-6-Internal Loop pdb2zjq1X.n649-664
Source: [PDB-id:chain] 2zjq:X (&rarr PDB)
Source: Information INTERACTION OF L7 WITH L11 INDUCED BY MICROCCOCIN BINDING TO THE DEINOCOCCUS RADIODURANS 50S SUBUNIT
Source: Compound RIBOSOMAL 23S RNA
Source: Resolution 3.30 ANGSTROMS.
Position (643, 671), (649, 664)
Primary structure ('_': anchors) _UGAAA_-_CGGAGG_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		10: C2'-exo, 14: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		14: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 3 11 &larr
3 4 5 ↑
4 4 12 →
5 5 6 ↑
6 6 7 ↑
7 8 9 ↑
8 9 10 ↑
9 10 11 ↑
10 12 13 ↑
11 13 15 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 15 Watson-Crick/Watson-Crick cis
2 2 13 Watson-Crick/Watson-Crick cis
3 3 11 Bifurcated/O2' ?
4 4 10 Watson-Crick/O2' ?
5 4 11 O2'/Bifurcated ?
6 5 10 O2'/Bifurcated trans y
7 6 9 Bifurcated/Watson-Crick cis y
8 7 8 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters