Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'6-3-Internal Loop pdb2zjq1X.n1132-1164
Source: [PDB-id:chain] 2zjq:X (&rarr PDB)
Source: Information INTERACTION OF L7 WITH L11 INDUCED BY MICROCCOCIN BINDING TO THE DEINOCOCCUS RADIODURANS 50S SUBUNIT
Source: Compound RIBOSOMAL 23S RNA
Source: Resolution 3.30 ANGSTROMS.
Position (1133, 1163), (1140, 1159)
Primary structure ('_': anchors) _GGAGAA_-_GGA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		5: C4'-exo, 12: C4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 2 13 →
3 5 11 &larr
4 6 7 ↑
5 6 12 →
6 7 8 ↑
7 9 10 ↑
8 10 11 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 13 Watson-Crick/Watson-Crick cis
2 2 12 Bifurcated/O2' ?
3 5 12 Bifurcated/O2' ?
4 6 10 Watson-Crick/O2' ?
5 6 11 O2'/Bifurcated trans
6 7 10 O2'/Bifurcated trans
7 8 9 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters