Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'22-Segment pdb2zjq1X.i574-597
Source: [PDB-id:chain] 2zjq:X (&rarr PDB)
Source: Information INTERACTION OF L7 WITH L11 INDUCED BY MICROCCOCIN BINDING TO THE DEINOCOCCUS RADIODURANS 50S SUBUNIT
Source: Compound RIBOSOMAL 23S RNA
Source: Resolution 3.30 ANGSTROMS.
Position (574, 597)
Primary structure ('_': anchors) _GAGUCCGAAUAGGGCGGCAUUA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		3: C4'-exo, 4: C2'-exo, 7: C2'-exo, 10: C4'-exo, 11: C4'-exo, 19: C2'-exo, 23: C4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 4 16 →
3 10 11 ↑
4 12 13 ↑
5 13 14 ↑
6 14 15 ↑
7 15 16 ↑
8 17 18 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 3 16 O2'/Watson-Crick trans y
2 5 14 Watson-Crick/Watson-Crick cis
3 6 13 Watson-Crick/Bifurcated cis y
4 8 10 O2'/Bifurcated ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters