Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'5-Hairpin pdb2zjq1X.e223-229
Source: [PDB-id:chain] 2zjq:X (&rarr PDB)
Source: Information INTERACTION OF L7 WITH L11 INDUCED BY MICROCCOCIN BINDING TO THE DEINOCOCCUS RADIODURANS 50S SUBUNIT
Source: Compound RIBOSOMAL 23S RNA
Source: Resolution 3.30 ANGSTROMS.
Position (223, 229)
Primary structure ('_': anchors) _GGCGA_
Bases with unusual sugar puckers
(Standard: C3'-endo)
4: O4'-endo, 7: C4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 2 7
2 5 6
3 6 7
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 7 Watson-Crick/Watson-Crick cis
2 2 5 Hoogsteen/O2' ?
3 2 6 O2'/Bifurcated trans y
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters