Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'1-3-Internal Loop pdb2zjpFX.n2479-2535
Source: [PDB-id:chain] 2zjp:X (&rarr PDB)
Source: Information THIOPEPTIDE ANTIBIOTIC NOSIHEPTIDE BOUND TO THE LARGE RIBOSOMAL SUBUNIT OF DEINOCOCCUS RADIODURANS
Source: Compound RIBOSOMAL 23S RNA
FLIPPED INTERNAL
Source: Resolution 3.70 ANGSTROMS.
Position (2483, 2531), (2487, 2529)
Primary structure ('_': anchors) _U_-_CGC_
Bases with unusual sugar puckers
(Standard: C3'-endo)
1: C2'-exo, 2: C2'-exo, 3: C4'-exo, 7: O4'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 3
2 5 6
3 7 8
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 5 O2'/Watson-Crick cis y
2 1 8 Watson-Crick/Watson-Crick cis
3 2 3 Hoogsteen/O2' ?
4 3 4 Watson-Crick/Watson-Crick cis y
5 3 7 Hoogsteen/Watson-Crick trans y
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters