Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'7-5-Internal Loop pdb2zjpFX.n1695-1731
Source: [PDB-id:chain] 2zjp:X (&rarr PDB)
Source: Information THIOPEPTIDE ANTIBIOTIC NOSIHEPTIDE BOUND TO THE LARGE RIBOSOMAL SUBUNIT OF DEINOCOCCUS RADIODURANS
Source: Compound RIBOSOMAL 23S RNA
FLIPPED INTERNAL
Source: Resolution 3.70 ANGSTROMS.
Position (1701, 1725), (1707, 1717)
Primary structure ('_': anchors) _GACGUAU_-_GCCAA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		4: C4'-exo, 7: C4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 3 →
2 3 15 ↓
3 3 16 ↑
4 4 5 ↑
5 5 7 →
6 7 8 &larr
7 8 9 ↑
8 11 12 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 16 Watson-Crick/Watson-Crick cis
2 3 15 O2'/Bifurcated ?
3 4 14 O2'/Bifurcated ?
4 4 15 O2'/Bifurcated ?
5 5 14 Watson-Crick/Watson-Crick trans
6 7 12 Bifurcated/O2' ?
7 8 11 O2'/Bifurcated trans
8 8 12 Bifurcated/O2' ?
9 9 10 Watson-Crick/Watson-Crick cis
10 10 11 Bifurcated/O2' ?
11 12 16 Sugar/O2' ?
12 14 15 Hoogsteen/Sugar cis y
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters