Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'3-6-Internal Loop pdb2zjp1X.n75-108
Source: [PDB-id:chain] 2zjp:X (&rarr PDB)
Source: Information THIOPEPTIDE ANTIBIOTIC NOSIHEPTIDE BOUND TO THE LARGE RIBOSOMAL SUBUNIT OF DEINOCOCCUS RADIODURANS
Source: Compound RIBOSOMAL 23S RNA
Source: Resolution 3.70 ANGSTROMS.
Position (80, 103), (84, 96)
Primary structure ('_': anchors) _CGA_-_UUUGAC_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		3: C4'-exo, 5: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 2 3 ↑
3 6 7 ↑
4 11 12 ↑
5 12 13 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 13 Watson-Crick/Watson-Crick cis
2 2 11 O2'/Bifurcated ?
3 2 12 Bifurcated/Watson-Crick cis
4 3 10 O2'/Bifurcated ?
5 3 11 O2'/Bifurcated ?
6 5 6 Watson-Crick/Watson-Crick cis
7 5 11 Watson-Crick/O2' trans
8 8 10 Sugar/O2' ?
9 11 12 Bifurcated/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters