Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'1-2-Internal Loop pdb2zjp1X.n1955-2046
Source: [PDB-id:chain] 2zjp:X (&rarr PDB)
Source: Information THIOPEPTIDE ANTIBIOTIC NOSIHEPTIDE BOUND TO THE LARGE RIBOSOMAL SUBUNIT OF DEINOCOCCUS RADIODURANS
Source: Compound RIBOSOMAL 23S RNA
Source: Resolution 3.70 ANGSTROMS.
Position (1959, 2042), (1961, 2039)
Primary structure ('_': anchors) _A_-_GG_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		6: C4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		6: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 2 3 ↑
2 2 7 →
3 4 5 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 7 Watson-Crick/Watson-Crick cis
2 2 3 Hoogsteen/O2' ?
3 2 5 O2'/Bifurcated ?
4 3 4 Watson-Crick/Watson-Crick cis
5 5 7 Hoogsteen/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters