Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'5-6-Internal Loop pdb2zjp1X.n171-178
Source: [PDB-id:chain] 2zjp:X (&rarr PDB)
Source: Information THIOPEPTIDE ANTIBIOTIC NOSIHEPTIDE BOUND TO THE LARGE RIBOSOMAL SUBUNIT OF DEINOCOCCUS RADIODURANS
Source: Compound RIBOSOMAL 23S RNA
Source: Resolution 3.70 ANGSTROMS.
Position (165, 185), (171, 178)
Primary structure ('_': anchors) _GAACU_-_UCAGUA_
Bases with unusual sugar puckers
(Standard: C3'-endo)
12: C4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2
2 2 12 &larr
3 3 4
4 3 14
5 4 5
6 5 6
7 8 9
8 9 10
9 10 11 &larr
10 11 13
11 13 14
12 14 15
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 15 Watson-Crick/Watson-Crick cis
2 2 12 O2'/Bifurcated ?
3 2 13 O2'/Watson-Crick ?
4 2 14 Hoogsteen/Sugar trans
5 3 12 Bifurcated/O2' ?
6 5 10 O2'/Bifurcated trans
7 6 9 Watson-Crick/Watson-Crick cis
8 7 8 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters