Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'2-3-22-Multiloop pdb2zjp1X.m530-606
Source: [PDB-id:chain] 2zjp:X (&rarr PDB)
Source: Information THIOPEPTIDE ANTIBIOTIC NOSIHEPTIDE BOUND TO THE LARGE RIBOSOMAL SUBUNIT OF DEINOCOCCUS RADIODURANS
Source: Compound RIBOSOMAL 23S RNA
Source: Resolution 3.70 ANGSTROMS.
Position (539, 597), (542, 563), (567, 574)
Primary structure ('_': anchors) _GA_-_GGA_-_GAGUCCGAAUAGGGCGGCAUUA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		1: C2'-exo, 3: C4'-exo, 4: C2'-exo, 6: C2'-exo, 7: C2'-exo, 8: O4'-endo, 11: C2'-exo, 12: C4'-exo, 13: C2'-exo, 28: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 4 6 →
3 6 7 ↑
4 8 12 →
5 9 11 →
6 10 11 ↑
7 13 25 →
8 15 16 ↑
9 16 17 ↑
10 19 20 ↑
11 21 22 ↑
12 22 23 ↑
13 23 24 ↑
14 26 27 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 33 Watson-Crick/Watson-Crick cis
2 2 32 Watson-Crick/O2' ?
3 3 6 Bifurcated/O2' ?
4 3 32 O2'/Bifurcated ?
5 4 5 Watson-Crick/Watson-Crick cis
6 8 9 C/O2' ?
7 8 11 O2'/Watson-Crick ?
8 8 12 O2'/Bifurcated ?
9 9 10 Watson-Crick/Watson-Crick cis
10 12 25 O2'/Watson-Crick trans y
11 14 23 Watson-Crick/Watson-Crick cis
12 15 22 Watson-Crick/Bifurcated cis y
13 17 19 O2'/Bifurcated ?
14 18 20 O2'/Watson-Crick ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters