Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'17-Segment pdb2zjp1X.i2084-2102
Source: [PDB-id:chain] 2zjp:X (&rarr PDB)
Source: Information THIOPEPTIDE ANTIBIOTIC NOSIHEPTIDE BOUND TO THE LARGE RIBOSOMAL SUBUNIT OF DEINOCOCCUS RADIODURANS
Source: Compound RIBOSOMAL 23S RNA
Source: Resolution 3.70 ANGSTROMS.
Position (2084, 2102)
Primary structure ('_': anchors) _GCCCAAAGGUCACCUCA_
Bases with unusual sugar puckers
(Standard: C3'-endo)
2: C4'-exo, 3: C4'-exo, 7: C4'-exo, 13: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 3 4
2 4 5
3 7 9
4 9 10
5 10 11
6 12 13
7 13 14
8 14 15
9 15 16
10 18 19
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 4 8 Bifurcated/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters