Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'22-Segment pdb2z4l1B.i991-1014
Source: [PDB-id:chain] 2z4l:B (&rarr PDB)
Source: Information CRYSTAL STRUCTURE OF THE BACTERIAL RIBOSOME FROM ESCHERICHIA COLI IN COMPLEX WITH PAROMOMYCIN AND RIBOSOME RECYCLING FACTOR (RRF). THIS FILE CONTAINS THE 50S SUBUNIT OF THE FIRST 70S RIBOSOME, WITH PAROMOMYCIN AND RRF BOUND. THE ENTIRE CRYSTAL STRUCTURE CONTAINS TWO 70S RIBOSOMES AND IS DESCRIBED IN REMARK 400.
Source: Compound 23S RRNA
Source: Resolution 4.45 ANGSTROMS.
Position (991, 1014)
Primary structure ('_': anchors) _AAAGUCAUGGUUAAGUGGGAAA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		2: C2'-endo, 5: C2'-endo, 6: C2'-endo, 14: C2'-endo, 16: C2'-endo, 19: C2'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		5: syn, 16: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 &larr
2 3 4 ↑
3 5 7 ↑
4 7 8 ↑
5 8 9 ↑
6 9 10 ↑
7 10 11 ↑
8 11 12 ↑
9 12 13 ↑
10 15 17 ↑
11 17 18 ↑
12 18 19 &larr
13 20 21 ↑
14 22 23 ↑
15 23 24 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 13 15 Watson-Crick/O2' ?
2 23 24 Bifurcated/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters