Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'6-Segment pdb2vpl1B.i32-39
Source: [PDB-id:chain] 2vpl:B (&rarr PDB)
Source: Information THE STRUCTURE OF THE COMPLEX BETWEEN THE FIRST DOMAIN OF L1 PROTEIN FROM THERMUS THERMOPHILUS AND MRNA FROM METHANOCOCCUS JANNASCHII
Source: Compound FRAGMENT OF MRNA FOR L1-OPERON CONTAINING
Source: Resolution 2.30 ANGSTROMS.
Position (32, 39)
Primary structure ('_': anchors) _GAGAAA_
Bases with unusual sugar puckers
(Standard: C3'-endo)
4: C1'-exo, 6: C2'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2
2 2 3
3 5 6
4 7 8
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 4 6 Hoogsteen/O2' ?
2 7 8 Bifurcated/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters