Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'6-8-Internal Loop pdb2vhpFA.n599-631
Source: [PDB-id:chain] 2vhp:A (&rarr PDB)
Source: Information STRUCTURE OF PDF BINDING HELIX IN COMPLEX WITH THE RIBOSOME (PART 4 OF 4)
Source: Compound 16S RIBOSOMAL RNA
FLIPPED INTERNAL
Source: Resolution 3.74 ANGSTROMS.
Position (601, 629), (610, 622)
Primary structure ('_': anchors) _GGAACU_-_GAAAUCCC_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		4: C2'-exo, 5: C2'-exo, 6: C2'-exo, 7: C4'-exo, 10: C2'-exo, 11: C4'-exo, 13: C4'-exo, 15: C2'-exo, 17: C4'-exo, 18: C4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		13: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 3 4 ↑
2 3 17 &larr
3 5 6 ↑
4 6 7 ↑
5 7 8 ↑
6 9 10 ↑
7 12 13 →
8 14 15 ↑
9 15 16 ↑
10 17 18 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 2 C/O2' ?
2 1 18 Watson-Crick/Watson-Crick cis
3 2 17 O2'/Bifurcated ?
4 5 12 Watson-Crick/Watson-Crick cis y
5 6 11 Watson-Crick/Watson-Crick cis
6 8 9 Watson-Crick/Watson-Crick cis y
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters