Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'7-5-Internal Loop pdb2vhpFA.n592-640
Source: [PDB-id:chain] 2vhp:A (&rarr PDB)
Source: Information STRUCTURE OF PDF BINDING HELIX IN COMPLEX WITH THE RIBOSOME (PART 4 OF 4)
Source: Compound 16S RIBOSOMAL RNA
FLIPPED INTERNAL
Source: Resolution 3.74 ANGSTROMS.
Position (593, 639), (599, 631)
Primary structure ('_': anchors) _UCUGAUA_-_UCAGA_
Bases with unusual sugar puckers
(Standard: C3'-endo)
2: C2'-exo, 3: C2'-endo, 4: C2'-exo, 5: C2'-exo, 7: C4'-exo, 11: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2
2 3 4
3 5 6
4 5 13
5 6 7
6 8 9
7 10 11
8 11 12
9 12 13
10 15 16
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 3 Hoogsteen/Sugar cis y
2 1 16 Watson-Crick/Watson-Crick cis
3 2 15 Watson-Crick/Bifurcated cis y
4 7 12 Watson-Crick/Watson-Crick cis
5 9 10 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters