Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'1-3-Internal Loop pdb2vhpFA.n248-270
Source: [PDB-id:chain] 2vhp:A (&rarr PDB)
Source: Information STRUCTURE OF PDF BINDING HELIX IN COMPLEX WITH THE RIBOSOME (PART 4 OF 4)
Source: Compound 16S RIBOSOMAL RNA
FLIPPED INTERNAL
Source: Resolution 3.74 ANGSTROMS.
Position (244, 272), (248, 270)
Primary structure ('_': anchors) _G_-_UAG_
Bases with unusual sugar puckers
(Standard: C3'-endo)
2: C2'-exo, 3: C2'-endo, 5: C4'-endo, 6: O4'-exo, 7: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2
2 7 8
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 8 Watson-Crick/Watson-Crick cis
2 2 4 Bifurcated/O2' ?
3 3 4 Watson-Crick/Watson-Crick cis y
4 4 6 Watson-Crick/C cis y
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters