Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'6-7-Internal Loop pdb2vhpFA.n1422-1470
Source: [PDB-id:chain] 2vhp:A (&rarr PDB)
Source: Information STRUCTURE OF PDF BINDING HELIX IN COMPLEX WITH THE RIBOSOME (PART 4 OF 4)
Source: Compound 16S RIBOSOMAL RNA
FLIPPED INTERNAL
Source: Resolution 3.74 ANGSTROMS.
Position (1423, 1469), (1431, 1462)
Primary structure ('_': anchors) _CACUUU_-_AAAAGAA_
Bases with unusual sugar puckers
(Standard: C3'-endo)
1: C2'-exo, 3: C4'-exo, 4: C2'-exo, 8: C4'-exo, 9: C2'-exo, 10: C2'-exo, 11: C2'-exo, 12: C1'-exo, 13: C2'-exo, 15: C2'-exo, 16: C2'-exo, 17: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 2 3
2 3 14
3 5 6
4 6 11
5 10 11
6 12 13
7 13 14
8 14 15
9 15 16
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 17 Watson-Crick/Watson-Crick cis y
2 6 12 O2'/Bifurcated ?
3 8 9 Watson-Crick/Watson-Crick cis y
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters