Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'1-3-Internal Loop pdb2vhp1A.n923-1386
Source: [PDB-id:chain] 2vhp:A (&rarr PDB)
Source: Information STRUCTURE OF PDF BINDING HELIX IN COMPLEX WITH THE RIBOSOME (PART 4 OF 4)
Source: Compound 16S RIBOSOMAL RNA
Source: Resolution 3.74 ANGSTROMS.
Position (929, 1380), (931, 1376)
Primary structure ('_': anchors) _C_-_UCC_
Bases with unusual sugar puckers
(Standard: C3'-endo)
1: C2'-exo, 2: C3'-exo, 3: C1'-endo, 4: C1'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
2: syn, 5: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 3
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 8 Watson-Crick/Watson-Crick cis
2 3 4 Watson-Crick/Watson-Crick cis
3 3 7 Watson-Crick/O2' ?
4 5 6 Hoogsteen/Watson-Crick cis y
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters