Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'5-4-Internal Loop pdb2vhp1A.n69-93
Source: [PDB-id:chain] 2vhp:A (&rarr PDB)
Source: Information STRUCTURE OF PDF BINDING HELIX IN COMPLEX WITH THE RIBOSOME (PART 4 OF 4)
Source: Compound 16S RIBOSOMAL RNA
Source: Resolution 3.74 ANGSTROMS.
Position (63, 98), (69, 93)
Primary structure ('_': anchors) _GGUAA_-_ACGA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		4: C2'-endo, 5: C3'-exo, 6: C2'-exo, 8: C2'-exo, 9: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		5: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 2 13 →
2 3 4 ↑
3 5 6 ↑
4 5 11 →
5 6 7 ↑
6 8 9 ↑
7 9 10 ↑
8 11 12 ↑
9 12 13 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 13 Watson-Crick/Watson-Crick cis
2 2 12 Watson-Crick/Watson-Crick cis
3 3 10 Watson-Crick/Watson-Crick cis
4 5 10 Bifurcated/Bifurcated cis y
5 6 10 O2'/Watson-Crick ?
6 7 8 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters