Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'5-7-Internal Loop pdb2vhp1A.n592-640
Source: [PDB-id:chain] 2vhp:A (&rarr PDB)
Source: Information STRUCTURE OF PDF BINDING HELIX IN COMPLEX WITH THE RIBOSOME (PART 4 OF 4)
Source: Compound 16S RIBOSOMAL RNA
Source: Resolution 3.74 ANGSTROMS.
Position (593, 639), (599, 631)
Primary structure ('_': anchors) _UCAGA_-_UCUGAUA_
Bases with unusual sugar puckers
(Standard: C3'-endo)
6: C2'-exo, 10: C4'-exo, 12: C2'-exo, 13: C2'-exo, 14: C2'-endo, 15: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2
2 4 5
3 4 12
4 5 6
5 6 7
6 8 9
7 10 11
8 11 12
9 13 14
10 15 16
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 16 Watson-Crick/Watson-Crick cis
2 2 15 Watson-Crick/Bifurcated cis y
3 5 10 Watson-Crick/Watson-Crick cis
4 7 8 Watson-Crick/Watson-Crick cis
5 14 16 Hoogsteen/Sugar cis y
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters