Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'22-Segment pdb2vhp1A.i742-765
Source: [PDB-id:chain] 2vhp:A (&rarr PDB)
Source: Information STRUCTURE OF PDF BINDING HELIX IN COMPLEX WITH THE RIBOSOME (PART 4 OF 4)
Source: Compound 16S RIBOSOMAL RNA
Source: Resolution 3.74 ANGSTROMS.
Position (742, 765)
Primary structure ('_': anchors) _AGACUGACGCUCAGGUGCGAAA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		2: C2'-exo, 3: C1'-endo, 4: C4'-exo, 7: C2'-endo, 8: C2'-endo, 9: C2'-exo, 10: C2'-exo, 11: C4'-exo, 12: C2'-exo, 14: C2'-exo, 16: C2'-exo, 22: C2'-exo, 23: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		9: syn, 20: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 2 3 ↑
2 3 4 ↑
3 10 11 ↑
4 11 12 ↑
5 12 13 ↑
6 14 15 ↑
7 15 16 ↑
8 16 17 ↑
9 21 22 ↑
10 22 23 ↑
11 23 24 ↑
Tertiary structure: Base-pairs
(anchor pairs) 		None
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters