Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'19-Hairpin pdb2vhp1A.e71-91
Source: [PDB-id:chain] 2vhp:A (&rarr PDB)
Source: Information STRUCTURE OF PDF BINDING HELIX IN COMPLEX WITH THE RIBOSOME (PART 4 OF 4)
Source: Compound 16S RIBOSOMAL RNA
Source: Resolution 3.74 ANGSTROMS.
Position (71, 91)
Primary structure ('_': anchors) _GAAGAAGCUUGCUUCUUUG_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		1: C2'-exo, 3: C2'-exo, 5: C2'-exo, 7: C2'-exo, 8: C2'-exo, 9: C1'-exo, 10: C2'-endo, 11: C3'-exo, 12: C3'-exo, 16: C2'-exo, 18: C2'-exo, 19: C2'-exo, 20: C3'-exo, 21: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		11: syn, 12: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 2 3 ↑
3 3 4 ↑
4 4 5 ↑
5 5 6 ↑
6 6 7 ↑
7 12 13 ↑
8 13 14 ↑
9 16 17 ↑
10 17 18 ↑
11 18 19 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 21 Watson-Crick/Watson-Crick cis
2 2 19 Watson-Crick/Watson-Crick cis
3 7 15 Watson-Crick/Bifurcated cis y
4 8 13 Watson-Crick/Watson-Crick cis y
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters